Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. J...encing libraries. Aird et al, Genome Biology 12:R18, 2011 Full Text Ampli...count data. Anders and Huber, Genome Biology 11:R106, 2010 Full Text edge...te computational resources for plant biology...3838 days ago
List of bioinformatics open source projects/software.
...om/b/msr_er/archive/2011/10/18/microsoft-biology-foundation-evolves-into-new-t...nfeRence Application") http://wolbachia.biology.virginia.edu/WuLab/Software.h...es Jenkins and its plug-in API to create biology workflows and manage computer clusters. caCORE on...3815 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/re...tleneck.htmlBottleSim BottleSim is a computer simulation program for simula...orSim ForSim: A Forward Evolutionary Computer Simulation http://www.anthro.....umkc.edu/liujian/IBDsim IBDSim is a computer package for the simulation of...3796 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : h...Lab in the Department of Computational and System Biology at the University of Pittsbur...of depth can be found here. FINDSITE: http://cssb.biology....3803 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an...3683 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sa...Centre. MapView - MapView: visualization of short reads alignment on desktop computer. From the Evolutionary Genomi...3578 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and ana...was produced in affiliation with the Computational Biology Center at Memorial Sloan-Kett...undation, National Institutes of Health, NASA Astrobiology...3600 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...for Cellular & Molecular Biology, Hyderabad CECRI - Central...or Mathematical Modelling and Computer Simulation, Bangalore CRRI...for Mathematical Modeling and Computer Simulation (CSIR) Indian Ac...re for Cellular and Molecular Biology Environment Protection Train...2629 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of...entre. * MapView - MapView: visualization of short reads alignment on desktop computer. From the Evolutionary Genomi...3301 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of intera...2261 days ago