2335 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...the contents of file less file — view file with page navigation head file — output the first 10 lines of file tail file — output the last 10 lines of file tail -f file &md...2325 days ago
Awk for Bioinformatician and computational biologist
...rches one or more files to see if they contain lines that match with the specified...put.If the action is not given, print all that lines that matches with the given p...d each line from test.tsv into k until no more lines are to be read: $ awk 'BEGIN...2324 days ago
2261 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ &&am...2226 days ago
Parallel Processing with Perl !
...file is using the while loop while (FILE){ Do something; } This is very slow(since we are using only one processor) and if we have 500 million lines in the dataset it takes more...2124 days ago