Results for "Dot Net and Sql"
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BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match...they are ambiguous between human and mouse. BBSplit tracks this ad...that was contaminated with e.coli and salmonella, you could do this...vailable here:https://sourceforge.net...2342 days ago
List of visualization tools for network biology
...y analyze a circuit (a “network” of interconnected components). The Network analysis provides the abi...le to infer details about the network as a whole at the species and/or population level. Few...p; Interactive visualization and exploration for any network a...2316 days ago
List of visualization tools for genome alignments
...o display a sequence assembly and associated metadata http://w...w- or high-depth read pileups and easy visualization of putativ...n http://lookseq.sourceforge.net MagicViewer Visualiza...lignment, identification of genetic variation and association w...bsp; Software for annotating and...2312 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their im...der/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_...g/ RepeatRunner http://www.yandell-lab.org/repeat_runner/inde...tch http://mummer.sourceforge.net/ REPuter http://www.genomes...2302 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be use...ld productivity tools, games, and desktop apps, so there are pl...d Tour of Python - Jake VanderPlas (PDF) (EPUB, MOBI)...Allen B. Downey, Jeff Elkner and Chris Meyers (2.4) Think Pyt...Beazley Python Data Science Hand...2283 days ago
Some useful Bioinformatics links
...litReads_BwaMem at master · arq5x/lumpy-sv https://gith...i-metagenome/docs/step9.html Bandage by rrwick https://rrwick....al http://mummer.sourceforge.net/manual/#nucmer assembly_olc.p...davfre/8596159 Inroduction to dot-plots http://www.code10.info...pairwise aligner for genomic and...2270 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (t...n be found at http://www.zlib.net/. install zlib library first...n library (staden.sourceforge.net). This can be downloaded from...tatus: executing depfiles commandsjitendra@jitendra-UNLOCK-INST...or Bio::SCFWriting MYMETA.yml and...2246 days ago
Tools for Protein-Protein Docking !
...dentifying correct solutions, and properly dealing with molecular flexibility and conformational changes. Follo...rch: FFTShape complementarity and electrostatics Re-scoring an...backbone dihedral refinement DOT Global rigid search: FFTShap...ocking Shape complementarity and Lennard-Jones potential Clus...2230 days ago
Ancestral sequence reconstruction steps !
...s were made in the eighties-nineties, led by the laboratory of&...the improvement of algorithms and of better sequencing and synt...our dataset has a good phylogenetic signal, is possible to perf...nbsp; 4.3- RDP4 for download and installation on Windows in "h...ocessing to inferences phylogenet...2207 days ago
List of non-commercial NGS genotype-calling software
...are produced extensively by genetics and genomics studies, relies cruc...ciated with genotype calling, and will especially benefit the g...ligned reads Software for SNP and genotype calling using single...s http://samtools.sourceforge.net/ Multi-sample Aligned reads...beagle.html Multi-sample LD Cand...2124 days ago
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