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Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? Check out the following agencies ... National Sci...and international research conferences and career developmen...n both clinical and basic scientific research into the cause,...2989 days ago
- SLURM is a queue management system and stands for Simple Linux Utility for Resource Manage...the world. SLURM is similar in many ways to most other queue...gnate. Below we will provide an outline of how to submit jobs...mory requests are sacrosanct in SLURM. Thus the amount of mem...
2966 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of...lyzed. Akin to a language palindrome—wherein a word or...the thymine found in DNA), geneticists usually represent DNA...2263 days ago
- ...t is a multipurpose tool designed for converting reads or other nucleot...d files It is multithreaded and can process data at over 500...bash shellscript for simpler invocation. Typical usage exampl...rap=70 For additional functions, please run the shellscript...
2765 days ago
- Linux Commands Cheat Sheet File System ls — list items in current directory ..., starting with the last 10 lines vim file...y 0 — no permissions  ...
2926 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF...4.0). It requires gene list in the form of Entrez Gene ID (U...ostars.org/p/191532/#191540 The advantage of using G...nbsp; Documentation:http://genescf.kandurilab.org/documentat...2923 days ago
- ...urce: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 Information: This script converts EnsEMBL GTF (Ex: https://gist.githubusercon...fd30cb57a29/sample.GTF) file to annotation table format. It gene...ple.GTF_enst_annotation.txt)2) Gene wise chromosome location wit...
2158 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome. The mapping occurs...the FASTA file at: http://www.ncbi.nlm.nih.gov/nuccore/NC_008...FASTQ and SAM files. paired-end sequencing: sequencing proce...ons for converting, sorting, indexing and viewing SAM/BAM fil...
2921 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value f...over certain threshold. We then assemble these frequent k-mer...ull-length splicing isoforms and to tease apart transcripts d...2737 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be...g flag to 1 continue endif...ss. If in doubt, ASK. Always indent statements within IFs, FO...2711 days ago
