Results for "6"
Top-level pages
Some useful Bioinformatics links
...ure.com/articles/s41598-017-07650-6.epdf?author_access_token=...kfYH58RS6uxm3vm4e4BG2AA_WKW84i6egKK271NwMq-NfzA%3D%3D nanopor...medcentral.com/articles/10.1186/1471-2105-15-302 Fast and se...medcentral.com/articles/10.1186/1471-2105-4-50 eval-documenta...2291 days ago
- .../@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\\]^_`abcdefghi/!"#$%&'\''()*+,-.\/0123456789:;<=>?@ABCDEFGHIJ/' f...;" scaffolds.fasta | sed s"/_/ /"g | awk '{ if ($4 >= 4000 && $6 >= 100) print $0 }' | sort...
2266 days ago
Installing Bio::SCF perl module
...1] make []gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -...gzwrite.o gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o ex.../usr/local/lib/pkgconfigchmod 644 /usr/local/lib/pkgconfig/zl...l/lib" /usr/bin/install -c -m 644 'libread.a' '/usr/local/lib...2267 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct soluti...2251 days ago
- ...tainerd linux-headers-4.4.0-116 linux-headers-4.4.0-116-generic linux-headers-4.4.0-2.../universe amd64 libhdf5-10 amd64 1.8.16+docs-4ubuntu1 [995 kB...to unpack .../libjs-mathjax_2.6.1-1_all.deb ...Unpacking libj...oment.')test/run1/contigs.fa 163897 245 66377 40.50 221 90.20...
2239 days ago
Creating conda environment for python2.7
...lowing packages will be downloaded: package | build ---------------------------|----------------- wheel-0.31.0 | py27_0 61 KB python-2.7.15 | h1571d57_0 12.1 MB certifi-2018.4.16 | py27_0 142 KB sqlite-3.23.1...2239 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r...-i 500 50 -d hs37m-k14s3.novo > r12.novo.sam smalt map -f samsoft -i 650 -o r12.smalt-k20s13.sam hs3...2231 days ago
Ancestral sequence reconstruction steps !
...f an ancestral gene and expression of the corresponding ancestral protein. The idea of protein 'resurrection' was suggested in 1963 by Pauling and Zuckerkandl.&...2228 days ago
LINKS scaffolder bloomfilter setting !
...n git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 4096 Jun 15 12:15 lib -rwxrwxrwx 1 urbe urbe 65141 Jun 15 17:13 LINKS ➜ bi.../anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -...LINKS Usage: ./LINKS [v1.8.6] -f sequences to scaffold (...2200 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA ag...ffn -subject genome.fna -outfmt 6 BLASTn tabular output format 6 Column headers:qseqid sseqid...atch number of mismatches 6. gapopen number of gap op...er HSPdefault values are:-outfmt "6 qseqid sseqid pident length m...2188 days ago
