Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anyt...-python and http://bioinformaticsonline.com/discussion/view/459/python-vs-perl More resources at https...2304 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Ref...2290 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they...a somewhat recent version of Perl (version 5.8 or above). More about the basic perl module installation steps che...ar zxf Bio::SCF.tarcd Bio::SCFperl Makefile.PLmakemake testmake...2267 days ago
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Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a...t problem whose major challenges include identifying correct solutions, and properly dealing with molecular flexi...2251 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembly appr...ull genome, just the 100 kb part you're interested in. I suggest the following algo...2214 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source, flexible, powerful and easy to use. One of the most important features of python...2231 days ago
LINKS scaffolder bloomfilter setting !
➜ bin git:(master) ✗ ls -l total 68 d...t:(master) ✗ swig -Wall -c++ -perl5 BloomFilter.i ➜ bloomfilte...xx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-m...xx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-m...and -s. ERROR fixed perl: symbol lookup error: /home/u...2199 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads...2159 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple p...for bioinformatics analysis. One best way is using perl threads and forks. Knowing ho...Here is a very simple and efficient technique with perl which i have been using. I am...2128 days ago