Tools to Predict the Impact of Missense Variants !
...in proteins, such as mutations discovered in cancer or missense polymorphisms” LRT“Identify a subset of deleterious mutations that disrupt highly conserved amino acids...2252 days ago
Binding Site Prediction in Protein !
...e structural models of the binding site. Ligands bound to structures are superimposed onto the model and u...iction and functional annotation based on binding-site similarity across superimposed groups of threading...2251 days ago
Protein-Protein Interaction Sites Predictions !
...-PPISP is built on three individual web servers: cons-PPISP, PINUP, and Promate ODA Ident...mal surface patches with the lowest docking desolvation energy values PINUP Protein binding site predict...2251 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutio...2251 days ago
2239 days ago
Creating conda environment for python2.7
...ing environment: done ==> WARNING: A newer version of conda exists. <== current version: 4.5.0 latest version: 4.5.2 Please update conda by running $ conda update -n base conda ##...2239 days ago
Learning Python Programming - a bioinformatician perspective !
...opularity due to its easy-to-use features which supports big data processing. In...python packages and programming. Python has a couple of points to recommend it t...hon 3, because it more semantically correct and supports newer features. I will...2231 days ago
Ancestral sequence reconstruction steps !
...valuate if this presence or absence, because this may to influence the grouping of clades, I perform with...seaview -> view proteins -> save as ...) Ideally do a tree-based groups. 4.3- RDP4 for down...2228 days ago
LINKS scaffolder bloomfilter setting !
...your output files (optional) -r Bloom filter input file for sequences supplied in -s (optional, if none...tput to .bloom) NOTE: BLOOM FILTER MUST BE DERIVED FROM THE SAME FILE SUPPLIED IN -f WITH SAME -k VALUE...2199 days ago
Understanding BLASTn output format 6 !
...tfmt "6 qseqid sseqid pident qlen length mismatch gapope evalue bitscore"supported format specifiers are:q...Name(s), separated by a ';' (in alphabetical order)sskingdoms Subject Super Kingdom(s), separated by a...2187 days ago