Results for "PA"
Top-level pages
Some useful Bioinformatics links
...s http://seqanswers.com/forums/showthread.php?t=26721 samtools(1) manual page http://www.htslib.org/doc/...atid%3D52:cat_coding_algorithms_dot-plots%26Itemid%3D76 RepeatFinder Home Page http://www.cbcb.umd.edu/so...2294 days ago
- ...bam > sample.unmapped.sam To gzip all your fastq files using gnu parallel and gzip: parallel gzip ::: *.fastq To gz...ur current folder: cat *.fastq | echo $((`wc -l`/4)) To count base pairs in a all .fastq.gz files i...
2269 days ago
Installing Bio::SCF perl module
...-perl-modules-manually-using-cpan-command-and-other-quick-ways...1] sudo make install [][sudo] password for jitendra: rm -f /us...... gcc3checking for a BSD-compatible install... /usr/bin/inst...0] sudo make install [][sudo] password for jitendra: Making in...2270 days ago
Tools to Predict the Impact of Missense Variants !
...have been employed for the task of pathogenicity prediction, includ...est, that is, correctly predict the pathogenic character of new vari...ad to overly optimistic results. Comparative evaluations of predicto...raint that reflects the strength of past purifying selection on the...2255 days ago
Binding Site Prediction in Protein !
...Identification protein interaction sites. It uses sequence conservation patterns in homologous proteins...for ligand-binding site prediction. metaPocket use LIGSITEcsc, PASS, Q-SiteFinder and...2254 days ago
Protein-Protein Interaction Sites Predictions !
...ated from two aspects: The interaction partners of a specific protein and the amino acid residues participating in a given PPI. In...server to predict interacting protein pairs and interacting sites by h...ODA Identification of optimal surface patches with the lowest docking...2254 days ago
Ligand Docking Tools and Software !
...lecule ("target"). The following is partial list of docking software...tochastic (GA) Flexible ligand and partially flexible target Argus...reconstruction)Flexible ligand and partially flexible targetHiTS_Sc...flexible targetICM SF (empirical) ParDOCK Stochastic (MC) RigidB...2254 days ago
Tools for Protein-Protein Docking !
...formation and small, local rigid rotations around selected conformations PatchDock Global rigid searchSh...ow and high resolution structure representation levels Different scoring parameters for the different res...2254 days ago
- ...ython ipython-notebook python-pandas python-sympy python-nose[sudo] password for urbe: Reading packa...l-updates/main amd64 python-pyparsing all 2.0.3+dfsg1-1ubuntu0...cted package libjs-mathjax.Preparing to unpack .../libjs-mathj...gs [%]/usr/lib/python2.7/dist-packages/matplotlib/font_manager...
2242 days ago
Creating conda environment for python2.7
...n environment with a specific package: conda create -n my...ersion of Python and multiple packages: conda create -n m...ate -n base conda ## Package Plan ## environment loc...################### | 100% Preparing transaction: doneVerifyin...2242 days ago
