Useful Publications and Websites for Deep Sequencing Data Analysis
...on mutations, and includes a software package called FSTpoolit for analysis of the resulting sequence reads.] Genotyping by sequencing Genome-wide genetic marker discovery and genotyping using next-generation sequenc...3833 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ll indels from diploid sample; designed to run on “nux-like platforms” Input: BAM Output: VCF KvarQ Description: in silico genotyping for selected loci in bacteria...2963 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ware (Java) https://github.com/ChimeRScope/ChimeRScope/wiki FastGT Genotyping of known SNV/SNP variants dir...ftware (Python) https://github.com/danielnavarrogomez/phy-mer LAVA Genotyping of known SNPs (dbSNP and Affy...2425 days ago