List of Bioinformatics Software Tools for Next Generation Sequencing
...customizable aligners (Bowtie, Bowtie 2, BWA, GSNAP, Isaac 2, SHRiMP 2, STAR, TMAP, TopHat and TopHat 2) Applications for RNA-Seq, Small RNA-Seq, WGS/WES, Pathway enrichment, Fusi...2942 days ago
Genome Assembly Tools and Software - PART1 !!
...ssembler 8.3 – Whole Genome Shotgun Assembler Celera Assembler (wgs-assembler) is scientific soft...Phusion 2.1c – Assembly Genome Sequences from Whole Genome Shotgun(WGS) Reads Phusion is a softwa...2719 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragment...efore the fragment size distribution can be learned empirically for each WGS data set separately.concordan...2556 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and out...2364 days ago
Some useful Bioinformatics links
...LTS 64-bit version - Ask Ubuntu https://askubuntu.com/questions/469553/how-to-install-flash-plugin-on-ubuntu-14-04-lts-64-bit-version lh3/fermi: A WGS de novo assembler based on th...2275 days ago