Useful Publications and Websites for Deep Sequencing Data Analysis
...e reads in FASTQ format. Deorowicz & Grabowski, Bioinformatics 27(6):860-2, 2011. PubMed Fast and accurate short read alignment with Burrows-Wheeler transform. Li & Durbin, B...3816 days ago
Next generation sequencing in R or bioconductor environment
...ng a universal standard alignment format, and is now supported by a wide variety of alignment tools. Documentation Samtools Website BWA (Burrows-Wheeler Alignment) Website ...3661 days ago
Commercial and public next-gen-seq (NGS) software
...sequences (reads) to the human genome at a rate of 25 million reads per hour on a typical workstation with 2 gigabytes of memory. Uses a Burrows-Wheeler-Transformed (BWT) index. Link...3555 days ago
Software packages for next gen sequence analysis
...sequences (reads) to the human genome at a rate of 25 million reads per hour on a typical workstation with 2 gigabytes of memory. Uses a Burrows-Wheeler-Transformed (BWT) index. Link...3279 days ago