Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r...2229 days ago
Frequent parameters for bioinformatics tools !
...0 --min_mean_q 85 --min_window_q 65 FastQ Screen --aligner bowtie2' (bwa for PacBio) --subset 1...VF) -culling_limit 2 RGI (ABR) --input_type contig bowtie2 (mapping) --sensitive  ...1332 days ago