BOL: Results for "bins"

Results for "bins"

- Surabhi Chaudhary@surabhi
BBTools for bioinformatician !
...=file out=histogram.txt bin=10 max=80000 That will plot the result in bins of size 10, with everything a...p; Code: $ pileup.sh in=mapped.sam out=stats.txt bincov=coverage.txt binsize=1000 That will give cov...
2312 days ago

- Jit@jit.aber
MetaBAT: An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities
...both accuracy and computational efficiency. Applying MetaBAT to an assembly from 1,704 human gut samples formed 1,634 genome bins (>200kb) in 3 hours, where 621 genome bins are >50% complete with <...
2659 days ago
- Jit@jit.aber
MaxBin: software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.
...Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in...e binning summary page.Users can use MEGAN or similar software on MaxBin bins to find the taxonomy of each...
2659 days ago
+6 more Bookmarks

- Jit@jit.aber
Genome Assembly Tools and Software - PART1 !!
...MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in...
2727 days ago
- Poonam Mahapatra@poonam
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...nces indexed with BBSplit, as they contain additional information regarding which sequences came from which reference file. BBSplit is a tool that bins reads by mapping to multiple...
2356 days ago

- Abhimanyu Singh@abhimanyu
Plot the density of genes in R
#column1 = chromosome name and column2 = start position of the gene # check if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2" %...
2326 days ago
- Jit@jit.aber
Installing Porechop on Ubuntu !
...fault: 5.0) --require_two_barcodes Reads will only be put in barcode bins if they have...by default when outputting reads into barcode bins) --middle_threshold MIDDLE...
2148 days ago
+1 more Bio-Scripts

- Jit@jit.aber
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ful for very high error rates). [false] --min-bin-perc FLT Consider only bins with counts above FLT * max_b...the count of the top scoring bin. [0.75] --bin-step FLT After a chunk of bins with values above FLT * max_b...
2334 days ago