Results for "NT"
Bio-Scripts
.../FALCON-examples/.git/ remote: Enumerating objects: 6, done. remote: Counting objects: 100% (6/6), done....Total % Received % Xferd Average Speed Time Time Time Current...2086 days ago
Perl script to create a consensus of nucleotide sequences !
...my @instances2 = qw ( AAAAA AACGA ATAAA AGAAA AGAAA); print consensus(@instances),"\n"; # ATAAA print consensus(@instances2),"\n";...p {length} @mi; # set w to the length of the longest element foreach my $j ( 0 .. $...2084 days ago
- ...ke -C thermo/utils make[2]: Entering directory '/home/urbe/To...d -I../../../src/shared/constants -c -o init.o init.c init....d -I../../../src/shared/constants -c -o mfeUtils.o mfeUtils....d -I../../../src/shared/constants -c -o complexes.o complexe...
2078 days ago
- ...m=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F201...m=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F201...file_gcs.c htslib-1.9/hfile_internal.h htslib-1.9/hfile_libc...tils.c htslib-1.9/textutils_internal.h htslib-1.9/thread_poo...
2071 days ago
Installing Platypus on Ubuntu !
...] Get:2 http://be.archive.ubuntu.com/ubuntu bionic-updates/ma...../6-libpython3-dev_3.6.5-3ubuntu1_amd64.deb ... Unpacking li...ile.so cythoning cython/variant.pyx to cython/variant.c /hom...x.c:3858:15: warning: assignment discards ‘const’ qualifier fr...2071 days ago
- ...an='\033[46m' # Cyan On_White='\033[47m' # White # High Intensity IBlack='\033[0;90m'...3[0;96m' # Cyan IWhite='\033[0;97m' # White # Bold High Intensity BIBlack='\033[1;90m'...
2070 days ago
- #! /usr/bin/Rscript ## Collect arguments args
2056 days ago
- ...s depth deduped_MA605.bam > deduped_MA605.coverage awk '$1 == $chr {print $0}' deduped_MA605.coverage > chr1_MA605.coverage #awk '$1 == 2 {print $0}' deduped_MA605.coverage >...
2056 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@SQ/{gsub("^SN:","",$2);print $2}' ); do samtools view -b aln-pe.mapp...2055 days ago
Setting up falconUnzip conda environments for genome assembly !
...denovo_asm Solving environment: done ## Package Plan ## environment location: /home/urbe/anaconda...1 198.7 MB python-intervaltree-2.1.0 |...conda-forge intel-openmp: 2019.1-1...############ | 100% python-intervaltree- | 22 KB | #####...2042 days ago
