Results for "B"
Bio-Scripts
Installing pb-assembly on Linux !
...M4/1.4.17-GCCcore-5.4.0 bzip2/1.0.6-foss-2016b...NLopt/2.4.2-foss-2016b fftw2/gcc/64/double/2.1.5...OFED-ATLAS-3.8.4-LAPACK-3.4.0-BLACS-1.1 HDF5/1.8.17-foss-201...######| Time: 0:00:00 12.07 MB/s numpy-1.13.1-p 100% |#####...2087 days ago
- ...00 ~]$ git clone https://github.com/pb-cdunn/FALCON-examples....s/.git/ remote: Enumerating objects: 6, done. remote: Count...curl -L https://downloads.pacbcloud.com/public/data/git-sym/.../ref2.fasta greg200k-sv2.2/subreads1.bam 12 18.6M 12 248...
2087 days ago
Perl script to create a consensus of nucleotide sequences !
...sus(@instances2),"\n"; # ATAAA exit; sub consensus{ my @mi = @_; c...>[] ); s/\s//g for @mi; my ($w) = sort {$b $a} map {length} @mi; # s...r = ( A=>1, T=>2, C=>3, G=>4 ); foreach my $B ( 0 .. $w-1 ){ push @c...2085 days ago
- ...f ‘fgets’, declared with attribute warn_unused_result [-Wunus...f ‘fgets’, declared with attribute warn_unused_result [-Wunus...f ‘fgets’, declared with attribute warn_unused_result [-Wunus...ared/rng energy.o -o ../../../bin/energy -L../../../lib -lpfu...
2079 days ago
- ...:(master) ✗ wget https://github.com/samtools/htslib/releases/download/1.9/htslib-...-1.9/cram/cram_decode.c htslib-1.9/cram/cram_decode.h htsli...t/auxf#values_java.cram htslib-1.9/test/auxf.fa htslib-1.9/...gcc -g -Wall -O2 -I. -c -o bcf_sr_sort.o bcf_sr_sort.c gc...
2072 days ago
Installing Platypus on Ubuntu !
...Processing triggers for man-db (2.8.3-2) ... Processing tri...mkdir -p -m 755 /usr/local/bin /usr/local/include /usr/loc...ant' extension gcc -pthread -B /home/urbe/anaconda3/envs/py2...ypes -fPIC -I./ -Ic -I/home/urbe/anaconda3/envs/py27/include/...2072 days ago
- ...xt Reset # Regular Colors Black='\033[0;30m' # Black Red='\033[0;31m'...BBlack='\033[1;30m' # Black BRed='\033[1;31m'...='\033[4;33m' # Yellow UBlue='\033[4;34m' # Blue...BIBlack='\033[1;90m' # Black BIRed='\033[1;91m'...
2071 days ago
- #! /usr/bin/Rscript ## Collect arguments args
2057 days ago
- #!/bin/bash Plot the coverage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_MA605.coverage..._MA605.coverage > chr2_MA605.coverage #Rscript library(reshape) my.chr2...
2057 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@SQ/{gsub("^SN:"..."",$2);print $2}' ); do samtools view -b aln-pe.mapped.sorted.bam $i >...a/Cdiff078.fa I=aln-pe.mapped.sorted.$i.bam O=aln-pe.mapped.sorted.${i}...2057 days ago
