Results for "IT"
Bio-Scripts
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1280 days ago
- (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying wit...
1279 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer versi...
1279 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying wit...
1279 days ago
- Use pen and paper the assemble it. If you are brave enough, you can try to assemble this set of reads: CAGATGTCCT GACCTTTTCT TAAGATCTTT TCTTTAGCCG TTTCTTCTTT GA...
1279 days ago
- (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1279 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1279 days ago
Install asciigenome using conda !
(JitMetaENV) ➜ viruses conda install -c bioconda asciigenome Collecting package metadata (current_repodata.json): / done Solving environment: done ==> WARNING: A newer version of conda exists.1279 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs...5661M 0 0 25.3M 0 0:03:43 0:03:43 --:--:-- 29.5M (JitMetaENV) ➜ day3 ls minikraken2_v2_8GB_201904.tgz (JitMetaENV) ➜ day3 mkdir krakenD...1278 days ago
- (JitMetaENV) ➜ day3 conda install -c bioconda krona Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2020.12.5-py36h5fab9bb_1 Proceed ([y]/n)?
1278 days ago
