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Install Kraken2 using conda !
By Jit 1417 days ago
(JitMetaENV) ➜ day2 conda install -c bioconda kraken2
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.9.0
latest version: 4.9.2
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /home/urbe/anaconda3/envs/JitMetaENV
added / updated specs:
- kraken2
The following packages will be downloaded:
package | build
---------------------------|-----------------
blast-2.10.1 | pl526he19e7b1_3 20.6 MB bioconda
entrez-direct-13.9 | pl526h375a9b1_0 5.5 MB bioconda
kraken2-2.1.1 | pl526hc9558a2_0 203 KB bioconda
perl-archive-tar-2.32 | pl526_0 31 KB bioconda
perl-base-2.23 | pl526_1 10 KB bioconda
perl-common-sense-3.74 | pl526_2 11 KB bioconda
perl-compress-raw-bzip2-2.087| pl526he1b5a44_0 44 KB bioconda
perl-compress-raw-zlib-2.087| pl526hc9558a2_0 72 KB bioconda
perl-digest-hmac-1.03 | pl526_3 9 KB bioconda
perl-digest-md5-2.55 | pl526_0 18 KB bioconda
perl-encode-locale-1.05 | pl526_6 11 KB bioconda
perl-exporter-tiny-1.002001| pl526_0 23 KB bioconda
perl-file-listing-6.04 | pl526_1 9 KB bioconda
perl-html-parser-3.72 | pl526h6bb024c_5 66 KB bioconda
perl-html-tagset-3.20 | pl526_3 12 KB bioconda
perl-html-tree-5.07 | pl526_1 129 KB bioconda
perl-http-cookies-6.04 | pl526_0 19 KB bioconda
perl-http-daemon-6.01 | pl526_1 14 KB bioconda
perl-http-date-6.02 | pl526_3 10 KB bioconda
perl-http-message-6.18 | pl526_0 51 KB bioconda
perl-http-negotiate-6.01 | pl526_3 13 KB bioconda
perl-io-compress-2.087 | pl526he1b5a44_0 81 KB bioconda
perl-io-html-1.001 | pl526_2 13 KB bioconda
perl-io-socket-ssl-2.066 | pl526_0 151 KB bioconda
perl-io-zlib-1.10 | pl526_2 9 KB bioconda
perl-json-4.02 | pl526_0 52 KB bioconda
perl-json-xs-2.34 | pl526h6bb024c_3 63 KB bioconda
perl-libwww-perl-6.39 | pl526_0 94 KB bioconda
perl-list-moreutils-0.428 | pl526_1 28 KB bioconda
perl-list-moreutils-xs-0.428| pl526_0 43 KB bioconda
perl-lwp-mediatypes-6.04 | pl526_0 22 KB bioconda
perl-lwp-protocol-https-6.07| pl526_4 9 KB bioconda
perl-mozilla-ca-20180117 | pl526_1 140 KB bioconda
perl-net-http-6.19 | pl526_0 19 KB bioconda
perl-net-ssleay-1.88 | pl526h90d6eec_0 289 KB bioconda
perl-ntlm-1.09 | pl526_4 15 KB bioconda
perl-pathtools-3.75 | pl526h14c3975_1 41 KB bioconda
perl-scalar-list-utils-1.52| pl526h516909a_0 38 KB bioconda
perl-socket-2.027 | pl526_1 31 KB bioconda
perl-storable-3.15 | pl526h14c3975_0 63 KB bioconda
perl-test-requiresinternet-0.05| pl526_0 7 KB bioconda
perl-time-local-1.28 | pl526_1 10 KB bioconda
perl-try-tiny-0.30 | pl526_1 17 KB bioconda
perl-types-serialiser-1.0 | pl526_2 10 KB bioconda
perl-www-robotrules-6.02 | pl526_3 12 KB bioconda
perl-xml-parser-2.44 | pl526h4e0c4b3_7 165 KB bioconda
perl-xml-sax-expat-0.51 | pl526_3 10 KB bioconda
perl-xml-simple-2.25 | pl526_1 48 KB bioconda
popt-1.16 | 1 171 KB bioconda
rsync-3.1.3 | h1245774_1003 286 KB conda-forge
tar-1.32 | hd4ba37b_0 891 KB conda-forge
------------------------------------------------------------
Total: 29.6 MB
The following NEW packages will be INSTALLED:
blast bioconda/linux-64::blast-2.10.1-pl526he19e7b1_3
entrez-direct bioconda/linux-64::entrez-direct-13.9-pl526h375a9b1_0
expat conda-forge/linux-64::expat-2.2.9-he1b5a44_2
kraken2 bioconda/linux-64::kraken2-2.1.1-pl526hc9558a2_0
pcre conda-forge/linux-64::pcre-8.44-he1b5a44_0
perl-archive-tar bioconda/linux-64::perl-archive-tar-2.32-pl526_0
perl-base bioconda/linux-64::perl-base-2.23-pl526_1
perl-common-sense bioconda/linux-64::perl-common-sense-3.74-pl526_2
perl-compress-raw~ bioconda/linux-64::perl-compress-raw-bzip2-2.087-pl526he1b5a44_0
perl-compress-raw~ bioconda/linux-64::perl-compress-raw-zlib-2.087-pl526hc9558a2_0
perl-digest-hmac bioconda/linux-64::perl-digest-hmac-1.03-pl526_3
perl-digest-md5 bioconda/linux-64::perl-digest-md5-2.55-pl526_0
perl-encode-locale bioconda/linux-64::perl-encode-locale-1.05-pl526_6
perl-exporter-tiny bioconda/linux-64::perl-exporter-tiny-1.002001-pl526_0
perl-file-listing bioconda/linux-64::perl-file-listing-6.04-pl526_1
perl-html-parser bioconda/linux-64::perl-html-parser-3.72-pl526h6bb024c_5
perl-html-tagset bioconda/linux-64::perl-html-tagset-3.20-pl526_3
perl-html-tree bioconda/linux-64::perl-html-tree-5.07-pl526_1
perl-http-cookies bioconda/linux-64::perl-http-cookies-6.04-pl526_0
perl-http-daemon bioconda/linux-64::perl-http-daemon-6.01-pl526_1
perl-http-date bioconda/linux-64::perl-http-date-6.02-pl526_3
perl-http-message bioconda/linux-64::perl-http-message-6.18-pl526_0
perl-http-negotia~ bioconda/linux-64::perl-http-negotiate-6.01-pl526_3
perl-io-compress bioconda/linux-64::perl-io-compress-2.087-pl526he1b5a44_0
perl-io-html bioconda/linux-64::perl-io-html-1.001-pl526_2
perl-io-socket-ssl bioconda/linux-64::perl-io-socket-ssl-2.066-pl526_0
perl-io-zlib bioconda/linux-64::perl-io-zlib-1.10-pl526_2
perl-json bioconda/linux-64::perl-json-4.02-pl526_0
perl-json-xs bioconda/linux-64::perl-json-xs-2.34-pl526h6bb024c_3
perl-libwww-perl bioconda/noarch::perl-libwww-perl-6.39-pl526_0
perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-0.428-pl526_1
perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.428-pl526_0
perl-lwp-mediatyp~ bioconda/linux-64::perl-lwp-mediatypes-6.04-pl526_0
perl-lwp-protocol~ bioconda/linux-64::perl-lwp-protocol-https-6.07-pl526_4
perl-mozilla-ca bioconda/linux-64::perl-mozilla-ca-20180117-pl526_1
perl-net-http bioconda/noarch::perl-net-http-6.19-pl526_0
perl-net-ssleay bioconda/linux-64::perl-net-ssleay-1.88-pl526h90d6eec_0
perl-ntlm bioconda/linux-64::perl-ntlm-1.09-pl526_4
perl-pathtools bioconda/linux-64::perl-pathtools-3.75-pl526h14c3975_1
perl-scalar-list-~ bioconda/linux-64::perl-scalar-list-utils-1.52-pl526h516909a_0
perl-socket bioconda/linux-64::perl-socket-2.027-pl526_1
perl-storable bioconda/linux-64::perl-storable-3.15-pl526h14c3975_0
perl-test-require~ bioconda/linux-64::perl-test-requiresinternet-0.05-pl526_0
perl-time-local bioconda/linux-64::perl-time-local-1.28-pl526_1
perl-try-tiny bioconda/linux-64::perl-try-tiny-0.30-pl526_1
perl-types-serial~ bioconda/linux-64::perl-types-serialiser-1.0-pl526_2
perl-www-robotrul~ bioconda/linux-64::perl-www-robotrules-6.02-pl526_3
perl-xml-parser bioconda/linux-64::perl-xml-parser-2.44-pl526h4e0c4b3_7
perl-xml-sax-expat bioconda/linux-64::perl-xml-sax-expat-0.51-pl526_3
perl-xml-simple bioconda/linux-64::perl-xml-simple-2.25-pl526_1
popt bioconda/linux-64::popt-1.16-1
rsync conda-forge/linux-64::rsync-3.1.3-h1245774_1003
tar conda-forge/linux-64::tar-1.32-hd4ba37b_0
Proceed ([y]/n)?
