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Bio-Scripts

• • Jit@jit.aber

  

  Install Kraken2 using conda !

  ...install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen s...le solve. Solving environment: failed with repodata from current_repodata.json, will retry wit...

  1272 days ago

• • Jit@jit.aber

  

  Install quast using conda !

  (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2.13.1-h7e3eb1...

  1272 days ago

• • Jit@jit.aber

  

  Install prokka using conda !

  ...install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen s...le solve. Solving environment: failed with repodata from current_repodata.json, will retry wit...

  1272 days ago

• • Jit@jit.aber

  

  Genome assembly Treasure Hunt

  ...TCATTCACAT CACATGAGCT GTCCTGAACA GAGCTGATCA TCTTTCAGAT AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing errors HINT: Overlaps are at least of len...

  1272 days ago

• • Jit@jit.aber

  

  Install seqtk using conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1272 days ago

• • Jit@jit.aber

  

  Install bwa using conda !

  (JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1272 days ago

• • Jit@jit.aber

  

  Install asciigenome using conda !

  (JitMetaENV) ➜ viruses conda install -c bioconda asciigenome Collecting package metadata (current_repodata.json): / done Solving environment: done ==> WARNING: A newer version of conda exists.

  1272 days ago

• • Jit@jit.aber

  

  Download minikraken database !

  ...Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 5661M 10...

  1271 days ago

• • Jit@jit.aber

  

  Install krona using conda !

  (JitMetaENV) ➜ day3 conda install -c bioconda krona Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2020.12.5-py36h5fab9bb_1 Proceed ([y]/n)?

  1271 days ago

• • Jit@jit.aber

  

  Install maxbin2 using conda !

  ...install -c bioconda maxbin2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen s...le solve. Solving environment: failed with repodata from current_repodata.json, will retry wit...

  1271 days ago

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