Results for "NT"
Bio-Scripts
#Installing MySQL on Ubuntu #To install MySQL on your Ubuntu server follow the steps below: First, upd...he root user type: sudo mysql #If you want to login to your MySQL server...ons. The first one is to change the authentication method from auth_socke...980 days ago
Install Php on Ubuntu / Apache server !
#Installing PHP 7.2 with Apache #If you are using Apache as your web server to install PHP and Apache PHP module run the following command: sudo apt install php libapache2-mod-php #Once the packages are installed restart the Apache service: sudo systemctl restart apache2980 days ago
Bash script to simulate a genome !
...q.gz out2=illumina2.fastq.gz > random_reads_illumina.log 2>&1 # interleave the paired-end reads...reformat.sh \ in=illumina1.fastq.gz in2=illumina2.fastq.gz out=illumina.int.fastq 2>/dev/null #...979 days ago
- $ pangolin --update #Major update conda activate pangolin git pull conda env update -f environment.yml pip install . re-installs pangolin.
963 days ago
- ...riables—$1, $2, $3, and so on ($0 is the entire line) — that break a line of text into individual words or pieces c...ommand performs the pattern/action statements once for each record in a fi...ator. #RS: RS command stores the current record separator character. S...
955 days ago
Split the string with underscore and store values in array with AWK !
more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}' #Other extraction more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}'> enriched_ids_list awk 'NR==FNR{tgts[$1]; next} $1 in tgts' enriched_ids_list result/GO.out > enriched_GO.out.xls955 days ago
Run Pango on your multifasta file !
...b/python3.8/site-packages/pangoLEARN/data/decisionTree_v1.joblib Header file: /h...b/python3.8/site-packages/pangoLEARN/data/decisionTreeHeaders_v1.joblib Designat...table/modules/model_persistence.html#security-maintainability-limitations warn...948 days ago
Omicron Sequences accession number !
EPI_ISL_6647956 EPI_ISL_6647957 EPI_ISL_6647958 EPI_ISL_6647959 EPI_ISL_6647960 EPI_ISL_6647962 EPI_ISL_6647961 Search the IDs in https://www.epicov.org/epi3/frontend946 days ago
Extract fasta header with ids !
...eader name with certain ids kraken --db ../../../../DATABASE/minikraken_20171019_8GB.tgz out.fa more out.fa_class.txt | grep "227859" | awk '{print $2}' > all_real_ids.txt mi...938 days ago
- bowtie2-build toy_dataset_contig_for_mapping.fasta toy_dataset_contig_for_mapping.btindex bowtie2 -x toy_dataset_contig_for_mapping.btindex -f -U toy_dataset_reads_for_mapping.fasta -S toy_dataset_mapped_species1.sam sa...
928 days ago
