Results for "B"
Bio-Scripts
Installing manadatory software for websites hosting !
...lling Apache #To install Apache, install the latest meta-package apache2 by running: sudo apt update...ll mysql-server sudo systemctl status mysql #Remove PHP and all his libraries and files sudo apt-get...976 days ago
Installing manadatory software for websites hosting !
...Apache, install the latest meta-package apache2 by running: sudo apt update...temctl status mysql #Remove PHP and all his libraries and files sudo apt-get...tall Php admin sudo apt install phpmyadmin php-mbstring php-gettext976 days ago
- #!/bin/sh EXPECTED_CHECKSUM="$(php -r 'copy("https://composer.github.io/installer.sig", "php://stdout");')"...
962 days ago
- Built-In Variables In Awk Awk’s built-in variables include the field variables—$1, $2, $3, and so on ($0 is the entire line) — that break a line of text into individ...e number of input records. Remember that records are usually li...ite space”, meaning space and tab characters. FS can be reassig...
954 days ago
Extract fasta sequences with ids in another file !
#Ids are in test.txt - one ids per line #sequences are in test.fa grep -w -A 2 -f test.txt test.fa --no-group-separator # seqtk seqtk subseq test.fa test.txt #faSomeRecods faSomeRecords in.fa listFile out.fa # seqkit seqkit grep -n -f list.txt sequences.fas > newfile2.fas949 days ago
Run Pango on your multifasta file !
...Input_for_Cova_all_samples_combined.fa (pangolin) [jnaraya...Input_for_Cova_all_samples_combined.fa (pangolin) [jnaraya...yan/anaconda3/envs/pangolin/lib/python3.8/site-packages/pango...yan/anaconda3/envs/pangolin/lib/python3.8/site-packages/sklea...947 days ago
Omicron Sequences accession number !
EPI_ISL_6647956 EPI_ISL_6647957 EPI_ISL_6647958 EPI_ISL_6647959 EPI_ISL_6647960 EPI_ISL_6647962 EPI_ISL_6647961 Search the IDs in https://www.epicov.org/epi3/frontend945 days ago
Extract fasta header with ids !
#Extract all the fasta header name with certain ids kraken --db ../../../../DATABASE/minikraken_20171019_8GB.tgz out.f...| awk '{print $2}' > all_real_ids.txt minimap2 -t 36 -k19 -w5 -A1 -B2 -O3,13 -E2,1 -s200 -z200 -N5...937 days ago
- bowtie2-build toy_dataset_contig_for_mapping.fasta toy_dataset_contig_for_mapping.btindex bowtie2 -x toy_dataset_contig_f...1.sam samtools sort toy_dataset_mapped_species1.bam -o toy_dataset_mapped_speci...
927 days ago
- ...The following packages will be downloaded: package...| build --------------------...Total: 15.3 MB The following packages wil...conda-4.11.0 | 14.4 MB | #########################...
922 days ago
