Results for "C"
Bio-Scripts
Bash script to simulate a genome !
...ols 1.10.2 and SAMtools 1.10 conda activate bcftools1.10.2...003401745.1_ASM340174v1_genomic.fna_upper.fasta.gz #...# genome size bgzip -@75 -cd GCA_003401745.1_ASM340174v1_...andomreads.sh build=1 \ ref=GCA_003401745.1_ASM340174v1_geno...976 days ago
- #Purge it sudo apt-get purge apache2 #Auto remove sudo apt-get autoremove #Remove sudo rm -rf /etc/apache2 #Try this sudo apt remove apache2.*
974 days ago
Installing manadatory software for websites hosting !
...all the installed apt list --installed apt list #Installing Apache #To install Apache, install the latest meta-package apache2 by running: sudo apt update sudo apt install apache2 #Install the mysql-serv...974 days ago
Installing manadatory software for websites hosting !
...all the installed apt list --installed apt list #Installing Apache #To install Apache, install the latest meta-package apache2 by running: sudo apt update sudo apt install apache2 #Install the mysql-serv...974 days ago
- #!/bin/sh EXPECTED_CHECKSUM="$(php -r 'copy("https://composer.github.io/ins...sig", "php://stdout");')" php -r "copy('https://getcomposer.org/i...p');" ACTUAL_CHECKSUM="$(php -r "echo hash_file('sha384', 'compos...r-setup.php exit 1 fi php composer-setup.php --quiet RES...
961 days ago
- $ pangolin --update #Major update conda activate pangolin git pull conda env update -f environment.yml pip install . re-installs pangolin.
960 days ago
Rules to run fastp / Snakemake !
...eads: 5 log: RESULTS + "/logs/fastp/{sample}.preprocess.log" shell:..." "--out1 {output.fwd} --out2 {output.rev} --thread {threads} --cut_tail --html {output.html} -...960 days ago
- ...t into individual words or pieces called fields. #NR: NR...ount of the number of input records. Remember that records ar...contains the field separator character which is used to divi...em. The default is a blank space. Whenever print has several...
953 days ago
Split the string with underscore and store values in array with AWK !
more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}' #Other extraction more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}'> enriched_ids_list awk 'NR==FNR{tgts[$1]; next} $1 in tgts' enriched_ids_list result/GO.out > enriched_GO.out.xls953 days ago
Extract the values using ids !
#Awk script awk 'NR==FNR{tgts[$1]; next} $1 in tgts' file1 file2 Look: $ cat file1 11002 10995 48981 79600 $ cat file2 10993 item 0 1...953 days ago
