Results for "PA"
Bio-Scripts
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2107 days ago
Generate simulated polyploid genome !
...heterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent.fasta #generated 50X of Illumina paired-end reads sim_reads --d...2105 days ago
Installing pb-assembly on Linux !
...ncurses/6.0 expat/2.1.0-foss-2016a...nBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0 flex/2.6.0...SuiteSparse/4.5.1-foss-2016a-METIS-5.1...# # PacBio(R) tools distributed via...2086 days ago
- ...ub.com/cdunn2001/git-sym.git fatal: destination path 'git-sym' already exists an...remote: Total 680 (delta 0), reused 1 (delta 0), pack-reused 674 Receiving objec...file 'greg200k-sv2.2' curl -L https://downloads.pacbcloud.com/public/data/git-sy...
2086 days ago
- #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3.0.6 ➜ nupack3.0.6 git:(m...es -Wmissing-declarations -DNUPACK_SAMPLE -I../../../src/shar...es -Wmissing-declarations -DNUPACK_SAMPLE -I../../../src/shar...~~~~~~~~~~~~~~~~~~~~~ cc -DNUPACK_SAMPLE -std=c99 -O3 -Wall...
2078 days ago
- ...c_warnings.m4 htslib-1.9/md5.c htslib-1.9/multipart.c htslib-1.9/os/ htslib-1...htslib-1.9/test/c1#noseq.sam htslib-1.9/test/c1#pad1.sam htslib-1.9/test/c1#pad...-o md5.o md5.c gcc -g -Wall -O2 -I. -c -o multipart.o multipart.c gcc -g -Wall...
2071 days ago
Installing Platypus on Ubuntu !
...-g -Wall -O2 -I. -c -o multipart.o multipart.c gcc -g -Wall...ico hts_os.pico md5.pico multipart.pico probaln.pico realn.pic...aconda3/envs/py27/compiler_compat -Wl,--sysroot=/ -fno-strict-...12.4 MB The following NEW packages will be INSTALLED:...2071 days ago
- #! /usr/bin/Rscript ## Collect arguments args
2056 days ago
Setting up falconUnzip conda environments for genome assembly !
...150 KB conda-forge pycparser-2.19 |...6 KB bioconda python-msgpack-0.5.6 | py27h470a23...ipaddress: 1.0.22-p...########## | 100% python-msgpack-0.5.6 | 282 KB | #######...2042 days ago
Split the multifasta in separate files !
cat Avaga_allPalindrome.fa | awk '{ if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")} print $0 > filename }'2010 days ago
