INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2380 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads...1974 days ago
Genome Assembly Tools and Software - PART1 !!
...mator for RNA-Seq Cufflinks assembles transcripts, estimates their abundances, and tests for differential e...arsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on...2714 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...tps://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances from reference sequences and...Reports organisms present in metagenomic samples and profiles their abundances (uses composition-based appro...2400 days ago
1390 days ago