Comment on "Run miniasm assembler on nanopore reads !"
minimap2 –x ava-ont \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ | gzip -1 > ./minimap....839 days ago
2218 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and mi...ep, and therefore the resulting assemblies are contiguous (i.e. long) but very no...d > reads.fa And then count how many contigs: grep ">" reads.fa...2218 days ago
Comment on "Run miniasm assembler on nanopore reads !"
urbe@urbo214b[allONT] minimap2 -xava-ont both.fastq both.fastq -t20 -X > AONT.paf [][M::mm_idx_gen::107.693*1.96] col...: 2.3-r531[M::main] CMD: minimap2 -xava-ont -t20 -X both.fastq both.fastq...~/Tools/miniasm/miniasm -f both.fastq AONT.paf > AONT.gfa [][M::main]...2324 days ago