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Results for "genome overlapping features"

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• • Rahul Nayak@rahul

  

  Convert masked genome to N letters. $ perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Genome #Masked #N #Convert

  2551 days ago

• • Jit@jit.aber

  

  Beginner’s #guide to #comparative #bacterial genome #analysis using #next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2

  2529 days ago

• • Jit@jit.aber

  

  Rename #non-accepted #nucleotide from sequence to 'N' $ bbmap/reformat.sh in=genome.fa out=genomeOut.fa iupacToN=t

  2515 days ago

• • Jit@jit.aber

  

  #Algorithms for computing parsimonious #evolutionary scenarios for genome evolution: https://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-3-2

  2393 days ago

• • Jit@jit.aber

  

  Why are de Bruijn #graphs useful for #genome #assembly? https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5531759/

  2369 days ago

• • Jit@jit.aber

  

  Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics

  2360 days ago

• • Rahul Agarwal@raag

  

  http://www.iprotein.info/ #genome #pathways #visualisation

  2336 days ago

• • Jit@jit.aber

  

  get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa

  2329 days ago

• • Jit@jit.aber

  

  Estimate the genome size https://bioinformatics.uconn.edu/genome-size-estimation-tutorial/ #Genome #Size #Estimate

  2299 days ago

• • Jit@jit.aber

  

  Harness PacBio reads with assemblers https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Large-Genome-Assembly-with-PacBio-Long-Reads #Reads #Assemblers #PacBio

  2298 days ago

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