2196 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
...Scholarship (MIS) is an initiative by the Malaysian Government to attract the best brain from around the world to pu...This scholarship aims to support Malaysian Government's effort to attract, motivate and retain talent...2205 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...(the PAF file) created in the fist step. These mappings are required for Racon assembly (Step 5). minima...acibio_oly.paf > 20170918_minimap2_mapping_fasta_oly_pacbio.paf 5 Run racon The output file is the FA...2226 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...R may ask if you want to install into a local library, just say Y and accept defa...R CMD INSTALL poRe_0.16.tar.gz The fastq extraction scripts for poRe are in...are ready to go. First off, let’s extract the 2D sequence data as FAS...2233 days ago
Comment on "SPAdes hybrid genome assembly"
...ols, and by default includes read correction. This takes up lots of RAM, so we are going to skip it....nion.pass.2D.fastq -o SPAdes_hybrid & Use samtools to extract the top contig: head -n...2233 days ago
2233 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do...2233 days ago
Comment on "List of genome announcement, notes and reporting journals"
Genomics data also accept draft genome assembly papers https://www.sciencedirect.com/journal/genomics-data2241 days ago
Comment on "How to install Perl modules on Mac OS X in easy steps !!"
Our Perl script for drawing requires the GD module(2.41 or later version). Moreover, the GD module requires the following packages. The gd graphics library The PNG graphics libraryThe zlib compression library2247 days ago
2261 days ago