Results for "Distinct"
Blogs
String graph based genome assembly software and tools !
...ithms based on the FM-index. As the FM-index is a compressed data structure, the algorithms are very memory efficient. The SGA assembly has three distinct phases. The first phase corre...2371 days ago
Classification of SARS-CoV2 Variant !
...a variant is a legitimate branch of an existing lineage: The variant should be transmitted from its original location to another "geographically distinct population"—say, anothe...933 days ago
Bookmarks
QuorUM: An Error Corrector for Illumina Reads
...orUM is mainly aimed at error correcting Illumina reads for subsequent assembly. It is designed around the novel idea of minimizing the number of distinct erroneous k-mers in the...2412 days ago
- Computational Biology is a huge field of study, that touches upon many distinct algorithmic and biological areas of study. What we are able to cover in this course will d...
2391 days ago
- +5 more Bookmarks
Top-level pages
List of In-silico Binding Site Prediction Tools
...Protein Data Bank format (PDB) containing a single frame or multiple frames generated by molecular dynamics (MD) simulations. MolAxis handles two distinct scenarios: It computes channe...3786 days ago
Genome Assembly Tools and Software - PART1 !!
...a set of reads, KmerGenie first computes the k-mer abundance histogram for many values of k. Then, for each value of k, it predicts the number of distinct genomic k-mers in the dataset...2728 days ago
- +1 more Top-level pages
Opportunity posts
Postgraduate Research Associate Bioinformatics / Computational Biology (Reference code: 59)
..., and state-of-the-art computing infrastructure. We are looking forward to expanding our team by a dedicated and strongly motivated person with a distinct interest in the challenges of...3238 days ago
Big Data Science Using R and Hadoop - Training Program on February 8-10, 2017
...aluru-38 Data has become a real source of interest and it is rightly considered to transform business in different sectors. Two distinct efforts are concerned based o...2721 days ago
Bio-Scripts
Clump Finding Problem Solved with Perl
#Find patterns forming clumps in a string. #Given: A string Genome, and integers k, L, and t. #Return: All distinct k-mers forming (L, t)-clumps in Genome. use strict; use warnin...2376 days ago
- #!/bin/bash #Counting k-mers for different k echo "k,unique,distinct,total" for k in {1..15}; do kat hist -o phiX_$k.hist -m $k phiX.fasta >/dev/null 2>&1 egrep -v '^#' phiX_$k.hist|awk '{if ($1==1) u=$2; d+=$2; t+=$2*$1;}\ END{print "'$k',"u","d","t}' done
836 days ago
Comments
Comment on "Run miniasm assembler on nanopore reads !"
...0; #seq: 702657[M::mm_idx_stat::123.917*3.22] distinct minimizers: 182052563 (37.70%...#seq: 455528[M::mm_idx_stat::1651.772*17.46] distinct minimizers: 186643623 (37.28%...#seq: 155969[M::mm_idx_stat::3089.212*18.39] distinct minimizers: 129075783 (48.61%...2323 days ago
