Samtools commands for bioinformatician !
...sam # -o : output file name samtools view -b -S -o sal_sej.bam sa...# -f INT show flag matches samtools -f 4 sal_sej.bam | less #...# always index sorted files samtools index sal_sej_sorted.bam.bam...### results into txt file samtools depth /path/to/sorted_bam.ba...1749 days ago
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Comment on "List of popular bioinformatics software/tools"
SAMtool quick tutorial at http://davetang.org/wiki/tiki-index.php?page=SAMTools http://samtools.sourceforge.net/samtools.shtml3794 days ago