gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotate the plots with taxonomic information. Different sets of annotations, including taxonomic assignments from cons...Tags: Bioinformatics, gbtools, Genome, Tool, GC, Bin, Plot
2655 days ago
Is this right to say genome size with their contigs file size?
I usually report and estimate the genome size by looking into file size of the contigs. Is this right way?Tags: Genome, Size, Estimate
2629 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciat...Tags: Bioinformatics, DeCoSTAR, Detection, Co-evolution, Reconstruction, Ancestral, Gene, Genome
2636 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, DBG2OLC
2631 days ago
Tags: Bioinformatics, SSPACE, Scaffolding, NGS, Genome, Contig
2615 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Annotation, Prokaryotes, Bacteria
2615 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as large genomes such as mammalian. CABOG is an extension of the Celera ...Tags: CABOG, Celera, Assembler, Overlap Graph, Bioinformatics, Assembly, Genome, Reads, NGS
2605 days ago
Tags: Bioinformatics, Steven, Salzberg, Lab, DNA, RNA, Assembly, Software, Mircobiome, NGS, Alignment, Genome
2605 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Annotation, NCBI, Download
2605 days ago