Results for "CDS"
Blogs
Ancient whole genome duplication (WGD) detection tools !
...s 8-ploid with 32 chromosomes (2n = 4x8 = 32) Download the tutorial for CDS and GFF annotation files m...//www.life.illinois.edu/ming/downloads/Spontaneum_genome/Sspon.v20190103.cds.fasta.gzwget http://www.life....1183 days ago
Bookmarks
- ...reads are distributed to separate directories, where they are assembled separately using SPAdes. The main output is a FASTA file of the (in frame) CDS portion of the sample for eac...
2767 days ago
HS3D: Homo Sapiens Splice Sites Dataset
...characterization. From the complete GenBank (Primate Sequences Division) Rel.123 (162,557 entries), entries of Human Nuclear DNA including Complete CDS and more than one Exon have b...1450 days ago
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Top-level pages
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bioresources and Sustainable Development (IBSD),...2598 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...identify mutations’ effect on splicing motifs; uses ensembl database 70 Input: Gene Name, Ensembl transcript ID, Ensembl Gene ID, Consensus CDS, RefSeq Peptide ID, or own se...2936 days ago
Wire posts
Bio-Scripts
Parse a genbank file using regular expressions
...print "Organism: $2\n"; } elsif(/(gene)(\s*)(\d*)(\.\.)(\d*)/) { print "Gene length: $5\n"; } elsif (/(CDS\s*)(\d*)(\.\.)(\d*)/) { # ex: CDS 357..1541...2944 days ago
Perl script to convert GFF 2 FASTA !
...= 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -format => 'fasta', -file => ">$ARGV[2].cds.fasta" ); my $outfile_pep =...# Output type description ###### # cds - translated sequence (starti...### Second, parse the GFF3 my %CDS; my %CDNA; my $mRNA_name;...2166 days ago
- +3 more Bio-Scripts
