Genome Assembly Tools and Software - PART2 !!
...pper. DNA Dragon 1.5.6 build1 – DNA Sequence Contig Assembler SoftwareDNA Dragon Contig Assembler assembles sequences, trace data (ABI, SCF, AB1), Illumina and Roche 454...2832 days ago
4088 days ago
Installing Bio::SCF perl module
...w to sucessfully install Bio::SCF module #sudo apt-get install.../ctf -I../ztr -I../plain -I../scf -I../exp_file -I../utils -I/u.../ctf -I../ztr -I../plain -I../scf -I../exp_file -I../utils -I/u.../ctf -I../ztr -I../plain -I../scf -I../exp_file -I../utils -I/u...2365 days ago
Reformat the file names with Perl
...;; $| = 1; my %hash; my @files = glob "*.scf"; if (!$ARGV[0]){ print "...by one for (0..$#files){ $files[$_] =~ s/\.scf$//; my @pName = split /\_/...0]"."_$hash{$pName[0]}{code}"."_$pName[1]"."."."scf"; if ( -f "$files[$_].scf"...2482 days ago
Perl script to count the number of files in a directory with regex
...PRIM16_","_A21_","_A22_","_A32_","_A33_","_A24_","_A25_","_A23_","_B34_","_B38_","_E3B2_","_E3T1_","_HPRIM14_","_H158_"); my @files = glob("*.scf *.SCF"); foreach my $name (@allNam...2383 days ago
Comment on "Setting up autoConTAMPR !"
...ibstaden-read1The following NEW packages will be installed: libbio-scf-perl libstaden-read10 upgrade...1 [182 kB]Get:2 http://archive.ubuntu.com/ubuntu/ trusty/universe libbio-scf-perl amd64 1.03-1build4 [23.3...1588 days ago
Comment on "Installing Bio::SCF perl module"
In Ubuntu, you can try the following command to install perl packages: sudo apt-get install libbio-scf-perlsudo apt-get install -y bioperlsudo apt-get install -y libstatistics-distributions-perlsudo apt-get install -y libterm-progressbar-simple-perl1657 days ago