2177 days ago
2215 days ago
Comment on "Basic command-line to run BLAST"
...) /genomes/Homo_sapiens/protein ... done.==> SIZE protein.fa.gz ... 12021576==&...) /genomes/Mus_musculus/protein ... done.==> SIZE protein.fa.gz ... 10463933==&...Sequence type: ProteinKeep MBits: TMaximum file size: 1000000000BAdding sequences...2284 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...21.629*3.27] mid_occ = 525[M::mm_idx_stat] kmer size: 15; skip: 5; is_HPC: 0; #seq...9.738*17.48] mid_occ = 525[M::mm_idx_stat] kmer size: 15; skip: 5; is_HPC: 0; #seq...6.956*18.40] mid_occ = 525[M::mm_idx_stat] kmer size: 15; skip: 5; is_HPC: 0; #seq...2321 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...reads. [false] -B, --batch-mb INT Reads will be loaded in batches of the size specified in megabytes. Value...is disabled. [1.0] Algorithmic options: -k INT Graph construction kmer size. [6] -l INT Number of edges p...2332 days ago
Comment on "SGA: String Graph Assembler"
Try this hierarchical genome assembly (HGA) assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779561/2745 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
...s undertaken in the context of cellular, developmental, and evolutionary processes. The nonredundant protein sets of flies and worms are similar in size and are only twice that of ye...2774 days ago
2839 days ago
Comment on "Does anyone have Nanopore latest updates?"
Yesterday, in his keynote address to the company’s user group conference in London, CTO Clive Brown announced the development of a new smartphone-powered nanopor...2938 days ago
Comment on "List of popular bioinformatics software/tools"
MEDIPS: genome-wide dierential coverage analysis of sequencing MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments https://www.bioconductor.org/packages/3.3/bioc/vignettes/MEDIPS/inst/doc/MEDIPS.pdf3038 days ago