Tags: Bioinformatics, Analysis, Format, JSON
2615 days ago
Tags: Bioinformatics, Analysis, Plot, UpSetR, Shiny, App, R
2605 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, DBG2OLC
2600 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. Enrichr currently contains a large collection of diverse gene set libraries available for analysis and down...Tags: Bioinformatics, Analysis, Enrichment, Enrichr, Web, Server, GO, Pathway, Genes, BED, Ontologies, Drug, Cell, Disease
2592 days ago
Tags: Bioinformatics, Tetra-Nucleotide, Analysis, Frequency, DNA, Phylogeny, Algorithms
2585 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads, resulting in better assembled genomes. Moreover, CL...Tags: Bioinformatics, Analysis, Scaffolding, CLA, Contig
2584 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Annotation, Prokaryotes, Bacteria
2584 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Annotation, NCBI, Download
2574 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, sma...Tags: Bioinformatics, Analysis, Assembly, Genome, Annotation, NCBI, Pipeline, Prokaryotes
2573 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny blocks among multiple species by using prebuilt alignments in the UCSC genome browser database, (ii) visualize and downlo...Tags: Synteny, Portal, Web-based, Application, Synteny, Block, Analysis
2565 days ago