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Results for "Pre-Alignment"

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• • Jit@jit.aber

  

  Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"

  Install cpanm to make installing other modules easier (you'll thank us later). You need to type these commands into a Terminal emulator (Mac OS X, Win32, Linux) cpan App::cpanminus Now install any module you can find. cpanm Module::Name

  2398 days ago

• • Rahul Nayak@rahul

  

  Comment on "Perl Module Installation"

  tar zxf Digest-SHA1-2.13.tar.gz cd Digest-SHA1-2.13 perl Makefile.PL make make test make install

  2418 days ago

• • Jit@jit.aber

  

  Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"

  urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap Version: v0.5.2Build date: Jun 6 2017...

  2472 days ago

• • Jit@jit.aber

  

  Comment on "SPAdes"

  Common usage  SPAdes: de Bruijn graph based assembler The last assembler we will run is SPAdes. SPAdes is different from the other assemblers in that it genera...

  2524 days ago

• • Bulbul@bulbul

  

  Comment on "BioGeek Fun"

  How about this oneliner ;) perl -ne 'chomp;if( />(.*)/){$head = $1; $i=0; next};@a=split("",$_); foreach(@a){$i++;if($_ eq "N" && $s ==0 ){print "$head\t$i"; $s =1}elsif($s==1 && $_ ne "N"){print "\t$i\n";$s=0}}' infile.fa

  2870 days ago

• • Jit@jit.aber

  

  Comment on "Platanus"

  Platanus README ***** VERSION ***** 1.2.3 ***** DESCRIPTION ***** Platanus is a de novo assembler designed to assemble high-throughput data. It can handle hi...

  2979 days ago

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