Results for "3D"
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Java and BioJava Tutorial links
BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of this bookmark is to provide useful links for bioinformatician. Please add more useful Java and BioJava links here ...3906 days ago
- ShRec3D is a program that aims at reconstructing a genome 3D structure (b) from the sole knowledge of the contacts between diff...i.nlm.nih.gov/pubmed/19815776). There are two options to run ShRec3D (on linuX only so far): the f...
3422 days ago
- ...Centurion, that jointly infers the locations of all centromeres in a single yeast genome by exploiting the centromeres’ tendency to cluster in 3D space. We first demonstrate t...
3008 days ago
- ...a. Individual annotation objects are displayed in Sockeye by using custom 3D models. Ensembl-derived and i...thms. The results of these comparative analyses are also displayed in the 3D environment of Sockeye. By us...
2637 days ago
- Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which include...
2604 days ago
- The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool developed at the Institute for Genome Sciences in the University of M...
2509 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...facilitate visually annotating and exploring the 3D physical architecture of geno...oops in the genome. It then generates a physical 3D model which represents the pl...h extensive genome annotation by juxtaposing the 3D model with diverse genomic as...2331 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genom...2323 days ago
GMOL: An Interactive Tool for 3D Genome Structure Visualization
GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve corresponding genome sequences.2240 days ago
HumCFS: a database of fragile sites in human chromosomes
...EpyMAQaxLlKw--fyCG_BpE1tBhCbnbw3BuzI2RMA57KLmXk5bZabRUiDQzRFHXd6hjm4kWSiLV3mU5XVMitqXUwFMSo4x5vbfty0EDQ9PW1sd1h923_TYXkvJ5niSwAyZ7BklJ0ujFAFhcKtjw%3D%3D1844 days ago
