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Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data....2927 days ago
- ...GeneMark-ET and AUGUSTUS provided motivation for designing a new combined tool for automatic gene prediction. http://www.ncbi.nlm.nih.gov/pubmed/26559507...
1964 days ago
WGS Celera Assembler version 8.3rc2
...1:41 run_greedy.csh-rwxrwxr-x 1 urbe urbe 297K Apr 10 11:40 sffToCA-rwxrwxr-x 1 urbe urbe 13K Apr 10 11:40 show-corrects-rwxrwxr-x 1 urbe urbe 557K Apr 10 11:41 splitUnitigs-r...2595 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...s good reads, bad reads and the QC results of each fastq file/pair.Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Il...2378 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...ts and 3 out of 4 ONT datasets into a single contig. The 12 PacBio data sets are PacBio E. coli sample, ERS473430, ERS544009, ERS554120, ERS605484, ERS...2364 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs and 828 mouse TFs, respectively. They have been derived from 11,237 pubmed articles, which descr...2340 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
...es such as ENCODE, Roadmap Epigenomics, and GTEx by facilitating data integration and hypothesis generation. https://www.nature.com/articles/nmeth.45562320 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...mes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover t...2202 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
...e:Chong Chu, Xin Li, and Yufeng Wu. "GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads." bioRxiv (2017): 125534.2196 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This i...2177 days ago
