FSA: Fast Statistical Alignment
...e the computational cost of multiple alignment. This randomized inference can be over ten times faster than a direct approach with little loss of accuracy. FSA can quickly align very...2658 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...sp;Dr. Vamsi Veeramachaneni, Chief Scientific Officer, Strand Life Sciences. “At Strand, we are continuously working towards improving the accuracy and efficiency of NGS data an...2399 days ago
2629 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...hotgun and amplicon datasets from current sequencing technologies such as Sanger, 454, Illumina. These simulated datasets can be used to test the accuracy of bioinformatic tools under...2551 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures to improve accuracy and efficiency. The method is...2522 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...cing (NGS) and the development of new sequencing techniques, the utility of traditional BLAST implementations is limited. CrocoBLAST combines the accuracy and general applicability of...2489 days ago
LIBSVM -- A Library for Support Vector Machines
...ta mining environments: RapidMiner, PCP, and LIONsolver. Automatic model selection which can generate contour of cross validation accuracy. https://www.csie.ntu.ed...2481 days ago
2377 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...ing homology predictions from BLAST or UBLAST with compositional classifications from a Naive Bayes classifier, RITA is able to achieve very high accuracy on short reads. Unlike other...2364 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
...valuated our tool on 30× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE connected over 99% of reads with 98.8% accuracy, which is, respectively, 10 a...2355 days ago