BIMA V3: an aligner customized for mate pair library sequencing
...ination, chimeras, etc.), and presence of structural variant breakpoints within reads increases mapping and alignment complexity. We describe an algorithm that is up to 20 times faster...2697 days ago
1969 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory...2682 days ago
2657 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligni...hundreds or even thousands of sequences using a randomized inference algorithm to reduce the computational c...2643 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...n each DNA molecule and the BLAST E-value score between homologs, maximally scoring chains of ordered gene pairs are computed and reported. This algorithm can be used to mine large evo...2632 days ago
2615 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies...affolders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a comparable numbe...2537 days ago
GeneProf: analysis of high-throughput sequencing experiment
...he analysis procedures employed to produce the data are fully transparent (cp. Tutorial 'Examining Public Next-Gen Data..'). Extensibility:Algorithm developers and computer progr...2494 days ago
MOSS: A System for Detecting Software Similarity
...s development in 1994, Moss has been very effective in this role. The algorithm behind moss is a significant improvement over other cheating detection algorithms (at least, over those known...2337 days ago