2760 days ago
2748 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants...oints within reads increases mapping and alignment complexity. We describe an algorithm...2712 days ago
1984 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and t...2697 days ago
2672 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein,...ng hundreds or even thousands of sequences using a randomized inference algorithm...2658 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchaine...aximally scoring chains of ordered gene pairs are computed and reported. This algorithm...2647 days ago
2630 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using...S scaffolders using Illumina paired reads of three bacterial genomes. Our algorithm...2552 days ago