PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...onal hardware devices. PLAST stands for Parallel Local Sequence Alignment Search Tool and is was&n...elevant hits with user-defined criteria (E-Value, identity, coverage, alignment length, etc.), Does not requ...2341 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is speci...mpts to combine the best of local and global alignments algorithms in searching for...ns of sequences in order to achieve the best alignment. ACANA is also robust to the...2336 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing tho...ogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive visualization of alignments, trees and variants Harvest...2334 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty...tween pair of sequences. FOGSAA is a fast Global alignment algorithm. It is basically a...protein or nucleotide) and results in an optimal alignment faster than conventional dyma...2334 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
...e detailed status and logging information; extract fasta sequence files from the leaf nodes of a completed simulation; extract pairwise multiple alignment files (.maf) from leaf and br...2333 days ago
2333 days ago
Mugsy: multiple whole genome alignment tool
...nome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segment..., and the segment-based progressive multiple alignment strategy from Seqan::TCoffee....V and Salzberg SL. Mugsy: Fast multiple alignment of closely related whole geno...2333 days ago
2329 days ago
TeachEnG: Teaching Engine for Genomics
...nal games to help students and researchers understand key bioinformatics concepts. The current version includes interactive modules for sequence alignment and phylogenetic tree reconst...2328 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...justments upon improvement of nanopore sequencing technology. The first step of NanoSim is read characterization, which provides a comprehensive alignment-based analysis and generates...2324 days ago