Results for "Alignments"
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...ng for easy comparison and overlap of two structures, rank and display basepairs in colour and to also visualize corresponding multiple sequence alignments and co-variation information....2802 days ago
- ...d-to-reference or genome-genome alignments is lost for structural variat...ontext to understand, including alignments and other genomic information...is way Ribbon shows patterns in alignments of many reads across multiple...ool for viewing complex genomic alignments. Script at https://gith...
2752 days ago
- ...n C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC...
2739 days ago
- ...ebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as...
2714 days ago
- ...earching depending on the amplicons types (ITS or 16S). If WGS are chosen, then bipype finds the SA coordinates of the input reads and generates alignments in the SAM format given singl...
2711 days ago
Standardized velvet assembly report
...ually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments against a reference genome)....2703 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...global alignment: regions of the two assemblies representing the same genomic locus (called blocks) are identified through reads' alignments and stored in a weighted...2693 days ago
- Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignments provide a basis for research...
1970 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...s of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural diffe...m rearrangement events. Computational tools that can visualize genome alignments in a meaningful manner are ne...2663 days ago
- ...more sensitive than both SSAHA2 and MegaBLAST at finding all possible alignments. Unlike other aligners that r...or one, alignment per query, or that use simple heuristics to select alignments, YAHA uses a directed acyclic...
2661 days ago
