Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS application note describes how integrated multi-omics functionality in Strand NGS was u...3201 days ago
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of...cation note on Integrated mRNA and microRNA transcriptome anal...3201 days ago
Computer simulation of genetic mechanism !!
...gn, model execution and model analysisSimulation models have become important tools in Bioinformatics studies. There...n the very diverse simulation tools that already exist, but focuses...ART is a set of simulation tools to generate synthetic next-gener...2979 days ago
Tools and Method for Haplotype phasing !
...ion of haplotype phase. Following are useful tools : Arlequin: http:/...linkage.rockefeller.edu/soft/gh/ The Genome Analysis Toolkit: http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit IMPUTE2: ht...1343 days ago
2807 days ago
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
Live Webinar on RNA-Seq Data Analysis Abstract: Strand NGS supports...an extensive workflow for the analysis and visualization of RNA-Seq...ment, Differential expression analysis with Statistical approach and...on events. Further downstream analysis such as GO and pathway analys...2759 days ago
How to install Perl modules on Mac OS X in easy steps !!
Today at work, I learned how to install Perl modules using&n...ll them: 1) Make sure you have the Apple Developer Tools (XCode) installed. These ar...ut unavailable commands. 1.5) Install Command Line Tools (Recent XCode versions only)...2758 days ago
Structural variation: the hidden genomic treasure
...s related to SV/CNV detection and analysis. In our lab we analyse SVs/CN...urce: NatRev Genetics) Related tools, databases and publications are...es biology have been documented. Tools CNVnatora tool for CNV disc...or annotation, classification and analysis of SVs at single nucleoti...2707 days ago
Important Journals, Blogs and Forums for Bioinformaticians
...e can get a bit heated!). Blue Collar Bioinformatics: articles related tool validation and the open source bi...m: Next-Gen Sequencing Blog covering new developments in NGS data & analysis. RNA-Seq Blog: Transcrip...2647 days ago
Software and Tools to detect structure variation with long reads !!
...resolution Following are the SV tools, which can assist you to achieve...igh-mismatch regions, and coverage analysis. Please note the current...ament: A Structural Variation Tool. Why ask a single sv-detectio...s an official software package for tools described in Chaisson e...2612 days ago