Results for "Analysis tool"
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Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.2919 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS...
2908 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome asse...-throughput sequencing data). It contains bash/perl/R scripts for running the anal...
2898 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number o...ingle program to generate a complete analysis report, or executed individua...mat to be entered into GAEMR’s anal...
2897 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultan...
2897 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Riv...
2181 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range o...arily large phylogenetic distances. Results: We present Cnidaria, a practical tool for clustering genomic and tr...2894 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods pa...ts development. Here is the acknowledgements section of our methods paper An anal...
2894 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze a...
2894 days ago
Linux command line exercises for NGS data processing
...ose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experie...e often to manipulate NGS data as compared to the other command line tools such as grep, sed, perl etc....2889 days ago
