FSA: Fast Statistical Alignment
...ic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protei.... This randomized inference can be over ten times faster than a direct approach with little loss of accuracy....2659 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...ed from eukaryotic or vertebrate species, on a usual computing server, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Brui...2596 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...that we developed: ABACAS, that is able to contiguate contigs from a de novo assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in assembled...2564 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and comput...2523 days ago
CoreTracker, a codon reassignment tracker
...ences of codon reassignment from the protein repertoire of a set of genomes by successively applying different algorithms. It’s a filtering approach that explore all possible rea...2516 days ago
2505 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2365 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt s...2359 days ago
Musket: a multistage k-mer spectrum based corrector
...leading next-generation sequencing read error correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introduces three correcti...2356 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...milarirty and the point of differences between pair of sequences. FOGSAA is a fast Global alignment algorithm. It is basically a branch and bound approach which starts branch expansion...2354 days ago