Results for "Assemblies"
Bookmarks
GARM:Genome Assembly, Reconciliation and Merging
...or different sequencing technologies. When scaffolds are provided, a process of finding probable compressions or extensions (CE) problems in the assemblies can be per-formed; contigs ar...2694 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguit...t rely on global alignment: regions of the two assemblies representing the same genomic...2694 days ago
- ...mple concept to improve contiguity of genome assemblies based on long molecule sequen...outcomes. The program uses information from assemblies made with illumina short read...hough we have not evaluated this program for assemblies generated with Oxford nanopor...
2693 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or...r with contigs than scaffolds, as scaffolds are often affected by mis-assemblies (no de novo assembler&nb...
2693 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotat...2596 days ago
- ...oftware tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST...
2565 days ago
- ...is tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial sequence da...
2557 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...nsus sequence to be corrected by iteratively mapping reads to the current assembly. An improved version, especially correction Pacfic Bioscience assemblies (PacBio) can be found he...2550 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can...select the best tool. In this context we propose a tool that improves assemblies (and, as a by-product, perhap...2543 days ago
Pollux: platform independent error correction of single and mixed genomes
...54 GS Junior errors. Introduced errors are 20 to 70 times more rare than successfully corrected errors. Furthermore, we show that the quality of assemblies improves when reads are corre...2543 days ago
