Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...ads and does not require them to be error-corrected. After the initial assembly, Flye performs an extra repea...The package also includes a polisher module, which produces the final assembly of high nucleotide-level qual...2199 days ago
2199 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...assical gene prediction, and more recent gene assembly (de-novo and genome-assisted)...g available best-of-breed gene prediction and assembly software, combining all evide...ttp://arthropods.eugenes.org/EvidentialGene/trassembly.html https://sourceforge.net...2196 days ago
Metassembler: merging and optimizing de novo genome assemblies
...nes multiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typically run multip...2196 days ago
MIX: Combining multiple assemblies from NGS data
...tigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the...2196 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...ng of a reference genome: the same sequencing data can be used for the assembly and for the mapping of the re...line can be found here. we recommend Trinity for the assembly. Trinity components should b...2174 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of the hexaploid sweet potato genome, which is highly heterozygous. Ranbow can a...2172 days ago
2168 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
...h bacterial genomes in mind. The method is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short a...2168 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
...ed-Read Iterative Contig Extension), a de novo genome assembler implemented in C++. Its name describes the strategy that it implements for genome assembly: PRICE uses paired-read infor...2162 days ago