2627 days ago
2627 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any given contig/scaffold based on its allele proportions. In t...2620 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2616 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping...2614 days ago
2614 days ago
2612 days ago
2602 days ago
Pacbio Long Reads Compatible Software and Tools
...ate page lists commercial software. Know of any other open source software for PacBio data? Email us. Software categories: De novo assembly Structural Variations Detect...2600 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...tion of the sequence of PacBio reads is usable for detection of region of similarity with other sequences, for aligning them to the contigs of an assembly, etc. Why is LoRDEC differen...2575 days ago