GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...d Gotoh, anchored). Overlapping of reads for de novo assembly. Transcript...ch more.GraphMap is also used as an overlapper in a new de novo genome assembly project called Ra (https://gi...2524 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short branches....2491 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2501 days ago
2490 days ago
2490 days ago
MOSS: A System for Detecting Software Similarity
...Python, Visual Basic, Javascript, FORTRAN, ML, Haskell, Lisp, Scheme, Pascal, Modula2, Ada, Perl, TCL, Matlab, VHDL, Verilog, Spice, MIPS assembly, a8086 assembly, a8086 assembly, MIPS assembl...2338 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of t...2371 days ago
QuorUM: An Error Corrector for Illumina Reads
...ng errors, thus making subsequent use of the data (e.g. for mapping or assembly) easier. Here we use the term...orUM is mainly aimed at error correcting Illumina reads for subsequent assembly. It is designed around the no...2369 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble...nctions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio&n...d long reads, and it will conduct a hybrid assembly.2368 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...ign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the post-assembly detection of contaminating se...2354 days ago