2085 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for comparative microbial genomics. The package is a cus...16S rRNA phylogeny, basic DNA and codon statistics, proteome comparisons using BLAST...2077 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleoti...ly compared. The tool includes functionality to extract, analyze, and automate BLAST...2040 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleoti...ly compared. The tool includes functionality to extract, analyze, and automate BLAST...2036 days ago
vcfR: a package to manipulate and visualize VCF data in R
VcfR is an R package intended to allow easy manipulation and visualization of varian...ed to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices fr...2013 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST...2008 days ago
RepeatMasker compatible blast tool
RMBlast is a RepeatMasker compatible version of the standard NCBI blastn program. The primary difference...the addition of a new program "rmblastn" for use with RepeatMasker a...essary features to the stock NCBI blastn program. These include: S...https://anaconda.org/bioconda/rmblast...1970 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was develo...rch protein or DNA databases. BLAST is best used for sequence sim...yield different results from BLAST, and may be useful for motif...w of BLAST, see the NCBI BLAST Course. Additional informatio...penalty for a mismatch in the blast...1967 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene an...d from usual format such as protein table files and blast results, as well as home-made...example) Reads from common formats: Genbank, EMBL, blast,...1965 days ago
1965 days ago