SvABA: Structural variation and indel detection by local assembly
...ion of SGA (String Graph Assembler) by Jared Simpson, and BWA-MEM by Heng Li. Contigs...;rules. These contigs are then immediately aligned to the reference with BWA-MEM and parsed to identify va...1519 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
...lic read archive database (for instance, NCBI SRA database ) or be your own data. Then they are fragmented and aligned to scaffolds using BWA mem algorithm in BWA package. In the package, we p...1453 days ago
URMAP, an ultra-fast read mapper
URMAP, a new read mapping algorithm. URMAP is an order of magnitude faster than BWA with comparable accuracy on several validation tests. On a Genome in a Bottle (GIAB) variant call...1285 days ago
838 days ago